@echo off

for %%X in (castor-recon.exe) do (set recon="%%~$PATH:X")
if not defined recon (
        echo CASToR reconstruction program is not found. Please add castor-recon.exe in your PATH !
        exit /b
)

::::::::::::::::::::::::::: no Att
set verbose=-vb 3
set datafile=-df C:\CASToR\NEMA_tomo_constantCOR.cdh
set output=-fout C:\CASToR\NEMA_recon_noAtt_constantCOR
set last_it=-oit -1
set iteration=-it 10:1
set voxels_number=-dim 128,128,81
set voxels_size=-vox 4.7952,4.7952,4.7952
set optimizer=-opti MLEM
set projector=-proj incrementalSiddon
set psf=-conv gaussian,11.,11.,3.::post
set thread=-th 0
set out_flip=-flip-out Y
%recon% %verbose% %datafile% %output% %last_it% %iteration% %voxels_number% %voxels_size% %optimizer% %projector% %psf% %thread% %out_flip%